Biblio
“Functional Annotation of Plant Genomes”, in Cereal genomics II, 2013, p. 155.
, “Gramene: A Resource for Comparative Analysis of Plants Genomes and Pathways.”, in Methods in molecular biology (Clifton, N.J.), vol. 1374, 2016, pp. 141-63.
, “The Plant Ontology: A Tool for Plant Genomics.”, in Methods in molecular biology (Clifton, N.J.), vol. 1374, 2016, pp. 89-114.
, “Plant Pathway Databases.”, in Methods in molecular biology (Clifton, N.J.), vol. 1374, 2016, pp. 71-87.
, “Interactive Design and Visualization of N-ary Relationships”, in SIGGRAPH Asia 2017 Symposium on Visualization, New York, NY, USA, 2017.
, “Abiotic Stresses Modulate Landscape of Poplar Transcriptome via Alternative Splicing, Differential Intron Retention, and Isoform Ratio Switching.”, Frontiers in plant science, vol. 9, p. 5, 2018.
, “AgBioData consortium recommendations for sustainable genomics and genetics databases for agriculture.”, Database : the journal of biological databases and curation, vol. 2018, 2018.
, “AISO: Annotation of Image Segments with Ontologies”, Journal of Biomedical Semantics, vol. 5, p. 50, 2014.
, “Beyond gene ontology (GO): using biocuration approach to improve the gene nomenclature and functional annotation of rice S-domain kinase subfamily.”, PeerJ, vol. 9, p. e11052, 2021.
, “Biological ontologies in rice databases. An introduction to the activities in Gramene and Oryzabase.”, Plant & cell physiology, vol. 46, pp. 63-8, 2005.
, “Chia () Gene Expression Atlas Elucidates Dynamic Spatio-Temporal Changes Associated With Plant Growth and Development.”, Front Plant Sci, vol. 12, p. 667678, 2021.
, “Comparative analysis of predicted plastid-targeted proteomes of sequenced higher plant genomes.”, PloS one, vol. 9, p. e112870, 2014.
, “Correction for Vangay et al., "Microbiome Metadata Standards: Report of the National Microbiome Data Collaborative's Workshop and Follow-On Activities".”, mSystems, vol. 6, no. 3, 2021.
, “A cost-effective maize ear phenotyping platform enables rapid categorization and quantification of kernels.”, Plant J, vol. 106, no. 2, pp. 566-579, 2021.
, “Databases and bioinformatics tools for rice research”, Current Plant Biology, vol. 7-8, pp. 39 - 52, 2016.
, “De Novo Transcriptome Assembly and Analyses of Gene Expression during Photomorphogenesis in Diploid Wheat Triticum monococcum.”, PLoS ONE, vol. 9, 2014.
, “Differential Expression of Genes Involved in Host Recognition, Attachment, and Degradation in the Mycoparasite Tolypocladium ophioglossoides.”, G3 (Bethesda, Md.), 2016.
, “Differential Expression of Genes Involved in Host Recognition, Attachment, and Degradation in the Mycoparasite Tolypocladium ophioglossoides.”, G3 (Bethesda, Md.), 2016.
, “Differential Expression of Genes Involved in Host Recognition, Attachment, and Degradation in the Mycoparasite Tolypocladium ophioglossoides.”, G3 (Bethesda, Md.), vol. 6, pp. 731-41, 2016.
, “A draft phased assembly of the diploid Cascade hop (Humulus lupulus) genome.”, Plant Genome, vol. 14, no. 1, p. e20072, 2021.
, “Drought induces epitranscriptome and proteome changes in stem-differentiating xylem of Populus trichocarpa.”, Plant Physiol, vol. 190, no. 1, pp. 459-479, 2022.
, “Emerging semantics to link phenotype and environment.”, PeerJ, vol. 3, p. e1470, 2015.
, “Ensembl Genomes 2020-enabling non-vertebrate genomic research.”, Nucleic acids research, 2019.
, “Environmental stresses modulate abundance and timing of alternatively spliced circadian transcripts in Arabidopsis.”, Molecular plant, vol. 8, pp. 207-27, 2015.
, “Expression Atlas: gene and protein expression across multiple studies and organisms.”, Nucleic acids research, vol. 46, pp. D246-D251, 2018.
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