College of Agricultural Sciences

M. T. Hamblin, Close, T. J., Bhat, P. R., Chao, S., Kling, J. G., K. Abraham, J., Blake, T. K., Brooks, W. S., Cooper, B., Griffey, C. A., Hayes, P. M., Hole, D. J., Horsley, R. D., Obert, D. E., Smith, K. P., Ullrich, S. E., Muehlbauer, G. J., and Jannink, J. - L., “Population Structure and Linkage Disequilibrium in U.S. Barley Germplasm: Implications for Association Mapping”, Crop Science, vol. 50, no. 2, p. 556, 2010.

V. C. Blake, Kling, J. G., Hayes, P. M., Jannink, J. - L., Jillella, S. R., Lee, J., Matthews, D. E., Chao, S., Close, T. J., Muehlbauer, G. J., Smith, K. P., Wise, R. P., and Dickerson, J. A., “The Hordeum Toolbox: The Barley Coordinated Agricultural Project Genotype and Phenotype Resource”, The Plant Genome Journal, vol. 5, no. 2, p. 81, 2012.

Y. Chutimanitsakun, Cuesta-Marcos, A., Chao, S., Corey, A., Filichkin, T., Fisk, S., Kolding, M., Meints, B., Ong, Y. - L., Rey, J. Ignacio, Ross, A. S., and Hayes, P. M., “Application of marker-assisted selection and genome-wide association scanning to the development of winter food barley germplasm resources”, Plant Breeding, vol. 13, no. 6, pp. 563 - 570, 2013.

Z. Jeknić, Pillman, K. A., Dhillon, T., Skinner, J. S., Veisz, ó, Cuesta-Marcos, A., Hayes, P. M., Jacobs, A. K., Chen, T. H. H., and Stockinger, E. J., “Hv-CBF2A overexpression in barley accelerates COR gene transcript accumulation and acquisition of freezing tolerance during cold acclimation”, Plant Molecular Biology, vol. 84, no. 1-2, pp. 67 - 82, 2014.

M. Munoz-Amatriain, Cuesta-Marcos, A., Endelman, J. B., Comadran, J., Bonman, J. M., Bockelman, H. E., Chao, S., Russell, J., Waugh, R., Hayes, P. M., and Muehlbauer, G. J., “The USDA Barley Core Collection: Genetic Diversity, Population Structure, and Potential for Genome-Wide Association Studies”, PLoS ONE, vol. 91, no. 4, p. e94688, 2014.

B. Meints, Cuesta-Marcos, A., Ross, A. S., Fisk, S., Kongraksawech, T., Marshall, J. M., Murphy, K., and Hayes, P. M., “Developing Winter Food Barley for the Pacific Northwest of the US”, Crop Science, vol. 55, no. 4, p. 1563, 2015.

W. Deng, M. Casao, C., Wang, P., Sato, K., Hayes, P. M., E. Finnegan, J., and Trevaskis, B., “Direct links between the vernalization response and other key traits of cereal crops”, Nature Communications, vol. 6, p. 5882, 2015.

M. Mohammadi, Blake, T. K., Budde, A. D., Chao, S., Hayes, P. M., Horsley, R. D., Obert, D. E., Ullrich, S. E., and Smith, K. P., “A genome-wide association study of malting quality across eight U.S. barley breeding programs”, Theoretical and Applied Genetics, vol. 128, no. 4, pp. 705 - 721, 2015.

L. Gutiérrez, Germán, S., Pereyra, S., Hayes, P. M., Pérez, C. A., Capettini, F., Locatelli, A., Berberian, N. M., Falconi, E. E., Estrada, R., Fros, D., Gonza, V., Altamirano, H., Huerta-Espino, J., Neyra, E., Orjeda, G., Sandoval-Islas, S., Singh, R., Turkington, K., and Castro, A. J., “Multi-environment multi-QTL association mapping identifies disease resistance QTL in barley germplasm from Latin America”, Theoretical and Applied Genetics, vol. 128, pp. 501 - 516, 2015.

R. C. Graebner, Wise, M., Cuesta-Marcos, A., Geniza, M., Blake, T. K., Blake, V. C., Butler, J., Chao, S., Hole, D. J., Horsley, R., Jaiswal, P., Obert, D. E., Smith, K. P., Ullrich, S., and Hayes, P. M., “Quantitative Trait Loci Associated with the Tocochromanol (Vitamin E) Pathway in Barley”, PLOS ONE, vol. 10, no. 7, p. e0133767, 2015.

B. Meints, Brouwer, B. O., Brown, B., Cuesta-Marcos, A., Jones, S. S., Kolding, M., Fisk, S., Marshall, J. M., Murphy, K., Petrie, S., Rhinhart, K., Ross, A. S., and Hayes, P. M., “Registration of #STRKR Barley Germplasm”, Journal of Plant Registrations, vol. 9, no. 3, p. 388, 2015.

S. Muñoz-Amatriaín, Lonardi, S., Luo, M. C., Madishetty, K., Svensson, J. T., Moscou, M. J., Wanamaker, S., Jiang, T., Kleinhofs, A., Muehlbauer, G. J., Wise, R. P., Stein, N., Ma, Y., Rodriguez, E., Kudrna, D., Bhat, P. R., Chao, S., Condamine, P., Heinen, S., Resnik, J., Wing, R., Witt, H. N., Alpert, M., Beccuti, M., Bozdag, S., Cordero, F., Mirebrahim, H., Ounit, R., Wu, Y., You, F., Zheng, J., Simková, H., Dolezel, J., Grimwood, J., Schmutz, J., Duma, D., Altschmied, L., Blake, T. K., Bregitzer, P., Cooper, L., Dilbirligi, M., Falk, A., Feiz, L., Graner, A., Gustafson, P., Hayes, P. M., Lemaux, P., Mammadov, J., and Close, T. J., “Sequencing of 15 622 gene-bearing BACs clarifies the gene-dense regions of the barley genome”, The Plant Journal, vol. 84, no. 1, pp. 216 - 227, 2015.

R. C. Graebner, Hayes, P. M., Hagerty, C. H., and Cuesta-Marcos, A., “A comparison of polymorphism information content and mean of transformed kinships as criteria for selecting informative subsets of barley (Hordeum vulgare L. s. l.) from the USDA Barley Core Collection”, Genetic Resources and Crop Evolution, vol. 63, no. 3, pp. 477 - 482, 2016.

A. Castro, Cuesta-Marcos, A., Hayes, P. M., Locatelli, A., Macauly, M., Mastandrea, N., Silveira, M., Thomas, W., and Viega, L., “The completely additive effects of two barley phenology related genes (eps2S and sdw1) are explained by specific effects at different periods within the crop growth cycle.”, Plant Breeding, 2017.

D. W. Herb, Meints, B., Jennings, R., Romagosa, I., Moscou, M. J., Carey, D., Cistue, L., Filichkin, T., Fisk, S., Helgerson, L., Martens, C., Monsour, R., Thiel, R., Tynan, S., Thomas, W. T. B., Vinkemeier, K., and Hayes, P. M., “Effects of Barley (Hordeum vulgare L.) variety and growing environment on beer flavor”, Journal of the American Society of Brewing Chemists, vol. 75, pp. 345-353, 2017.

D. Herb, Benson, A., Carey, D., Cistue, L., Filichkin, T., Fisk, S., Helgerson, L., Jennings, R., Li, Y., Meints, B., Monsour, R., Moscou, M. J., Nguyen, A., Onio, A., Romagosa, I., Thiel, R., Thomas, W. B., Tynan, S. P., Vega, V., Vinkemeier, K., and Hayes, P. M., “Malt Modification and its Effects on the Contributions of Barley Genotype to Beer Flavor”, Journal of the American Society of Brewing Chemists, vol. 75, pp. 354–362, 2017.

H. Hisano, Meints, B., Moscou, M. J., Cistue, L., Echavarri, B., Sato, K., and Hayes, P. M., “Selection of transformation efficient barley genotypes based on TFA (transformation amenability) haplotype and higher resolution mapping of the TFA loci”, Plant Cell Reports, 2017.